I didn't put this page here to give you "the basics" on how to set up a reef tank (you can find that most anywhere), but to give you some simple guidelines, and good links on certain things that WE believe are the foundation of good reefkeeping.  Remember, other opinions may differ, and your mileage may vary!  ;-)

This page is simply an offering of what has worked best for us - the nuts and bolts of our reefkeeping "philosophy", for whatever that is worth.

Every reef tank, every setup, is different.  No one "set" of tools or equipment will work for everyone.  That said, here is what we feel is important...... (patience and research go without saying).

Protein Skimmer
Buy the biggest & best you have room for and can afford.  This is your #1 tool to remove "dissolved organic compounds" (pollution) from your syste.  Do NOT skimp here.
 Check out our DIY skimmer here
DSB (Deep/Live Sand Bed)
We've had several tanks over the years.  Bare bottomed tanks, crushed corals substrates, shallow, dead sand beds.  The 180g is the first tank in which we've had a DSB.  I would never again choose another substrate.  Never, in any of our tanks have our nitrates consistently remained absolutely undetectable. I strongly believe that a live, functioning DSB contributes greatly to the overall health of the system. 
Your sandbed should be at least 4" in depth at an absolute minimum.  Ours ranges from 5" - 8".  Although many people use silica sand without any problems, we use Aragonite sand for our DSB.  We're also lucky enough to have access to Southdown sand.  A couple thoughts on DSB's.....
Do NOT add sand sifting creatures such as sand-sifting starfish, horseshoe crabs, etc.  These creatures survive by eating the sandbed fauna.  What does this mean for you?  They will deplete your DSB of the microfauna, meaning you will have a clean, but dead DSB.  If your sandbed is dead, you will not realize any benefits - no denitrifiication will take place. 

You want copepods, amphipods, bristle worms, peanut worms, spaghetti worms etc. These are all good, necessary, & beneficial sandbed fauna.

A few good links....

 Deep Sand Beds - Dr. Ronald L. Shimek, Ph. D.

 The Why's and How's of Sand Beds - Dr. Ronald L. Shimek, Ph. D.

 Sandbed FAQ by Charles DeVito - Reefs.org

 Muddy Waters - Dr. Ronald L. Shimek, Ph. D.

 Particle Size of Southdown Sand from Home Depot - Rob Toonen
 

Live Rock
In essence, your live rock is your filtration (biological) for your tank.  It also provides a natural enviroment, which is both aesthetically pleasing, and very important for the well being of the creatures you will keep.  The type (Fiji, Marshall Island, Kaeolini, Tonga, Aquacultured, etc.) of live rock you use is personal preference only. 
The amount of live rock usually suggested is 1.5 - 2lbs per gallon of water capacity.  Less can be used if there a a functional DSB in place.  More will not hurt, as long as their is ample swimming room for your fish.

 We’re Almost There — The “Ins and Outs” of Live Rock (Reefkeeping 101)

 Live Rock - from Reefkeeping 101

 What Is Live Rock? - OZ Reef

 Cycling Live Rock - Dallas Warren, Reefs.org
 

Lighting
The subject of reef lighting is very complicated, and very controversial.  I'm not going to get into details - there is a LOT of great information out there.  Decide what you want to keep in your tank - that is most important, and will drive what type of lighting you will require.  The three most common types of reef lighting are PC, VHO, and MH.  I have no personal experience with PC lighting.  I like VHO lighting a lot, we supplement our current tank with 4 x 160w URI VHO bulbs (this is in addition to 3 x 250w Iwasaki MH's).  VHO lighting alone is perfect for a softie/mushroom/LPS tank.
 You can see our tank lighting here.
If you are considering sps (stony) corals or clams, there is no choice but MH (Metal Halide).  Again, this is my opinion and experience.

 Lighting FAQ - CoralReefEcosystems

 Saltwater Aquarium Lighting, Chapter 2 - About.com

 Lighting for the Reef Tank - Albert Thiel

 Photosynthesis and Photoadaptation - Sanjay Joshi

 Shedding Light on the Reef - Richard Harker

 Lighting the Reef Aquarium - Spectrum or Intensity? - Dana Riddle and Miguel Olaizola
 

Calcium/Alkalinity
Chemistry is NOT my strong point.  I won't pretend it is, and I won't lecture you on the relationship and balance between calcium, alkalinity, pH, temperature, salinity, etc.  I couldn't tell you what an ion is if you paid me.  What I can tell you, is that good, balanced, and stable Calcium, Alkalinity, and pH levels are of utmost importance.  I do know that they are very much related.  I do know that you should find ONE good, simple, balanced method of dosing calcium and alkalinity.  That said, here are a few excellent articles that can help you where I can't...

 Calcium and Alkalinity - TheReefweb.com

 What is Alkalinity? - by Randy Holmes-Farley

 More About Calcium and Alkalinity - Craig BingmanPh.D.

 How to Select a Calcium and Alkalinity Supplementation Scheme - by Randy Holmes-Farley

 Solving Calcium and Alkalinity Problems - by Randy Holmes-Farley
 

RO/DI
Use it.  99% of all tap water contains something you do not want in your tank.  Whether it be nitrates, phosphates, silicates, heavy metals, or other contaminants - none of these are good for your tank, and many will contribute greatly to nuisance algae problems.  A decent RO/DI filter is not very expensive (compared to the rest of your equipment), and well worth the investment.
Temperature & Salinity
Our salinity is consistently at 1.025.  Our temperature fluctuates between 79f - 82f (winter), and 80f - 83f (summer).  The salinity of a reef tank should NOT be less than 1.024.  Your temperature should NEVER be less than 76F - and even that is quite cool for a maintained temp.

 Salinity and Temperature - Craig Bingman and Rob Toonen

 What are Natural Reef Salinities and Temperatures…Really…and Does It Matter?

 The Great Temperature Debate - Various Authors, Reefs.org
 

Additives
My theory here is the fewer, the better.  There are 2 things that need to be added to a reef tank on a consistent basis:

(1)  Some sort of balanced calcium/alkalinity supplementation
(2)  Food.  The food you add will vary greatly by the creature you keep.  Personally, we feed only a (homemade blender "mush"), which we supplement with DT's Live Phytoplankton, and Golden Pearls. 
Beware of snake-oils, cure-alls, etc.  I will only say that there is no "magic" supplement which will bring all your corals to "life", brighten their colors, make them grow faster, etc.

Here is our  Homemade Fish Food Recipe

Follow these basic rules of thumb and you'll be fine...

(1)  Never add anything you do not test for.
(2)  Know the exact ingredients of everything you add to your tank.
(3) Realize that consistent water changes will replenish all necessary "trace elements".
 

Acclimation
Improper acclimation is one of the deadliest mistakes a reefer can make.  There are three tests that are vital for proper acclimation - salinity (I strongly recommend a refractometer), pH, and temperature.  Many reef creatures are extremely sensitive to rapid changes in salinity/temp/pH.  If these factors change to quickly, they can easily perish.  Mobile inverts (starfish, crabs, snails, shrimps, uchins, etc.) are some of the most sensitive.

 On Acclimating Livestock - WetWebMedia

 Acclimation
 

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