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The Great Chain of Being


The Physical

"Things which are put together are both whole and not whole, brought together and taken apart, in harmony and out of harmony; one thing arises from all things, and all things arise from one thing."
Heraclitus (quoted in Aristotle, On the World )
  
The outer world of pure FORM and ENERGY, the world of interacting physical structures. An overview of the size scales in our physical universe can be found at Universcale.
  

INTRODUCTION

The outer world is the world directly observed by our human senses and using sensory apparatus such as telescopes, microscopes, voltmeters, magnetometers, seismographs, X-ray machines, thermometers, etc. It is the realm of phenomena studied by modern physical science and is known as the physical world.

The inner world of the mind consists of interacting mental structures and is covered in The Great Chain of Mental Being .

All FORMS interact via FORCES at the subconscious or physical level and via INFORMATION at the conscious level. The nature of the connection between the inner and outer worlds forms the crux of the famous mind-body problem.

Within and beyond our local mental being is the greater spiritual world and is covered in The Great Chain of Spiritual Being. This realm has mainly been explored by mystics, yogis and other human beings who either are gifted with senses beyond the ordinary physical senses or who have refined their inner being and senses to the point that they can interact with the spiritual realm. This realm has been the main concern of religions throughout history.

Both the outer physical world, the inner mental world and the greater spiritual world are parts of The Great Chain of Being.

 
Here we will concerned with the physical world. The most basic FORMS of the physical world are SPACE and constructed structures such as galaxies, stars, planets, people, cells, molecules, atoms, etc. contained within that space. With ENERGY present, these structures interact with each other and change form, causing the phenomena of TIME.

FORM

FORM and SPACE
The most basic and greatest FORM is SPACE, the great void stretching out in all directions. Space is the great container, the great vessel that contains all the smaller vessels. Space is the background of physical reality, a manifold with three, or possibly more, geometric dimensions. Higher dimensional spaces may exist in the spiritual realms and/or at sub-quark lengths. Within our physical space exist physical FORMS, structures that interact with each other and with the underlying space, and without which space would be empty.

Locally space has three dimensions: length, width and height and is Euclidean or flat. At the microscopic level, at scales smaller than that of quarks (10-15 meters), there may be more dimensions that are "wrapped up" according to String Theory. At intermediate scales, those of planets and stars, space-time is curved due to gravity (see General Relativity). In interstellar and intergalactic voids space is very close to flat, inertial reference frames exist and follow the laws of Special Relativity. At very large scales, beyond the sizes of galaxy clusters, space is curved and deviates from Euclidean or flat space. The space of our known physical unverse may be contained in a greater multiverse of other three dimensional spaces, and all these may be contained in spaces of higher dimensions.

ENERGY and TIME
The change of forms, the interactions of forms, the movement of forms, all activity of the forms, takes place via ENERGY. Without energy, no change would be possible. With energy, change, becoming and measurable TIME are possible. Without energy, time could pass, but no one could tell how fast, slow, etc. Without energy and measurable time, one would have a physically static world close to the abstract world of eternity. There would only be being and no becoming. So SPACE is the most primordial and greatest FORM containing the smaller FORMS. When ENERGY is present, one gets SPACE-TIME.

CONSTRUCTED STRUCTURES
The interacting structures within space are constructs that primarily occupy a localized area of space. But secondarily, the possible influence of a structure can spread out to all the rest of space, so the idea of localization and how one defines a particular structure is somewhat of a human mental characterization. Each structure is composed of smaller structures bound together by energy or force. The smaller structures are composed of still smaller structures that are bound together more tightly than the larger structures, naturally enough. This process finally terminates with a group of fundamental particles that make up the basic building blocks of all physical structures. Whether these fundamental particles are of composed of still smaller particles is currently unknown.

Thus to probe smaller and smaller scales, as is done using particle accelerators to smash particles together, requires slamming them together at higher and higher energies to break them apart. So the scales that can be currently probed are limited by the largest energies that the world's particle accelerators can generate, which is about 2 TeV (2 trillion electron volts) at present (circa 2000 ACE).

The Form and Energy Problem. The study of pure FORM alone is the purview of Mathematics. In the physical world both FORM and ENERGY exist and are coupled together. How this is done at a fundamental level is unknown. Einsteins famous equation, E=mc2, states that the rest mass of a particle can be converted into energy and vice versa, but that energy is always associated with a particular form, usually photons. Photons of sufficient energy can be converted into particles and particles into photons. But there is no such thing as "pure energy" as is often stated, just as there is no such thing as a pure, bare, self-existing, unchanging particle. Pure energy, like bare particles, could not interact with anything else and so cannot be part of an interactive universe.

Energy can take two (or three forms):
   1. Binding energy (can be positive or negative)
   2. Kinetic energy or energy of motion
   3. Structural (this could perhaps be considered binding energy)

Is it possible to have FORMLESS beings as Buddhists discuss? Or does this merely mean formless in the way a gas or liquid is formless, i.e. without a rigid form although they do indeed have a FORM.



FUNDAMENTAL FORCES and PARTICLES


Strings
Current speculation in theoretical physics, known as String Theory, postulates the existence of vibrating strings that underlie all known forces and particles. However there is no experimental evidence supporting this theory as of yet.
The Fundamental Forces

Forces are related to changes in ENERGY.
There are Four known Fundamental forces and a host of secondary forces derived from them.

The Four Known Fundamental Forces in order of increasing relative strength:
   1. The gravitational force acts on mass-energy. Attractive only.
   2. The weak nuclear force acts on 6 flavor charges (Up, Down, Strange, Charm, Top, Bottom).
   3. The electromagnetic force acts on 2 electric charges (positive, negative). Attractive/Repulsive
   4. The color force (sometimes called the strong force) acts on 3 color charges (Red, Green, Blue).

An effective fifth force, Fermionic repulsion, exists as well. Particles can have spins that are either half multiples (spin 1/2) or whole multiples (spin 1) of the fundamental quantum spin state. Particles with spin 1/2, known as fermions , exhibit a quantum repulsion and hence cannot occupy the same space, or more exactly, the same quantum energy level. Because of fermionic repulsion, atoms, stars and planets can exist as stable bulk forms of matter. Particles of spin 1 are known as bosons and can be packed without limit into the same space. Bulk bosonic matter exhibits exotic properties such as superconductivity and superfluidity.


The Gravitational Force
Matter and energy interact with space-time. The distribution of matter-energy determines the curvature of space-time. In flat, or uncurved space-time, particles experience no acceleration and simply move linearly at a uniform velocity, unless perturbed by outside forces. The motion of particles in flat space-time is described by Einstein's Special Theory of Relativity. The forces of electro-magnetism, the strong force and the weak force depend on the composition of the particles, whereas gravity acts on all matter-energy independent of the composition.

In curved space-time, all particles, independent of their composition, experience an acceleration more commonly known as the force of gravity. Hence the curvature of space-time determines how matter-energy can move and redistribute itself. In fact "curvature" in space-time means acceleration. The detailed nature of the interaction of space-time with matter-energy is described by Einstein's General Theory of Relativity . Einsteins theory predicts several gravitational effects, that have been confirmed, that were not part of Newton's earlier theory, such as the bending of the path of light in a gravitational field, the slowing down of clocks as gravity increases and the red shift (or energy loss) of light as it leaves a gravitational field. Light bending around massive objects is called gravitational lensing and is an active area of astrophysical research.

The force of gravity can be described in simpler terms using Newton's earlier theory of gravity, which was superseded by Einstein's, but is still useful and widely used. The strength of the force of gravity is linearly proportional to the total mass of the two interacting bodies (with masses m1 and m2) and falls off as the square of the distance (R) between the bodies, or F = Gm1m2/R2. The force F is measured in Newtons, distance in meters and mass in kilograms. The strength coupling constant G has a currently measured value of: 6.67259x10-11 m3kg-1s-2

Bulk Form:
The known physical universe.


Black Holes
There are special compact configurations of matter-energy in which the gravitational field is so strong that the matter-energy configuration collapses down to a point, known as a singularity. Space-time is so strongly curved around such singularaties that within a radius known as the event horizon, even light cannot escape. Such objects are called Black Holes. If the sun collapsed to a black hole, the event horizon would have a radius of 3 Km. Black holes form from the collapse of massive stellar cores and are common in galaxies. The presence of many black holes can be inferred from X-rays emitted by matter orbiting around them in the form of an accretion disk if they are part of a close binary star system where the other member is a relatively normal star. The most famous such system is Cygnus X-1.

Large black holes of millions to billions of solar masses are also known to exist in the centers of galaxies. Some of the matter orbiting around such giant black holes can be ejected in the form of powerful jets that can span thousands of light years and are seen emanating from the centers of active galaxies called Seyefert galaxies, BL Lac objects or quasars depending on how strong the jets are and their orientation with respect to us.


Dark Matter and Dark Energy
Most of the mass of the universe (80%-95%) is apparently in the form of dark matter, which cannot be seen directly but whose presence can be inferred from its significant gravitational effects on visible, luminous matter (such as stars).

Observations of distant supernova show that the expansion of the universe is accelerating against the pull of gravity indicating a repulsive force at work that has been dubbed dark energy.


Fundamental Particles

Fundamental particles are particles with no known substructure and are the building blocks of composite particles. There are two classes of fundamental particles known. The first class are structural particles and are all fermions. The second class transmits forces and are all bosons. The Standard Model is the collective theory of the fundamental particles and the three nongravitational forces by which they interact.

The 12 Fermion Structural Particles (and 12 antiparticles)
  These are divided into two classes (light leptons and heavy quarks) and three families (I, II and III). The quarks and leptons are smaller than 10-19 meters in radius.

  Leptons
    I. Electron and Electron Neutrino
    II. Muon and Muon Neutrino
    III. Tau and Tau Neutrino
  
   Quarks
    I. Up and Down Quarks
    II. Strange and Charm Quarks
    III. Top and Bottom Quarks

The 4 (or 6) Boson Force Carrying Particles
  Photons - transmit the electromagnetic force
  Intermediate Vector Bosons - transmit the weak force
        W+ and W-
        Z0
  Gluons - transmits the color force
 
  Higgs boson - particle that provides mass but not confirmed
  Graviton - particle hypothesized to transmit gravity but not confirmed


The Electromagnetic Force

Affects particles with electric charges. Electric charge comes in two types: positive and negative. Like charges repel each other and unlike charges attract. The attractive and repulsive force is of the same strength. Beyond the qunatum scale the electric force falls off in strength as the distance squared and is linearly proportional to the product of the interacting charges. The strength coupling constant K has a currently measured value of: 8.9876x109 Nm2C-2 where N is the force in Newtons, m is meters and C is Coulombs, a measure of electric charge. The charge on one electron is 1.60217733x10-19 C. At the macroscopic level the behavior of the electromagnetic field is described by Maxwell's equations. At the microscopic, i.e. quantum scale applicable in atoms, the behavior is described by the theory of quantum electrodynamics.

Accelerating electric charges produce waves in the electromagnetic field that, being light itself, emanates away from the charges at the speed of light. This most fundamental speed is c = 3x108 m s-2, in a vacuum. Light or electromagnetic waves travel at a slower speed in media (such as glass, air or water).

Electrons, Muons and Tauons (structural particles)
Photons (force particle)

Bulk photon form (or all the EM radiation fields in the universe):
  The Cosmic Microwave Background
  Other Radiation Backgrounds: Gamma-ray, X-ray, Ultraviolet, Optical, IR, Radio


The Weak Force
This is the strangest force apparently, given that it is hard to find any good descriptions of it. The weak force is responsible for radioactive decay in nuclei and is roughly 1013 times weaker than the strong force. The weak force is a nonsymmetrically acting force and is different for particles and anti-particles (Charge Violation), for a scattering process and its mirror image (Parity Violation), and for a scattering process and the time reversal of that scattering process (Time Violation). The weak interaction affects all left-handed leptons and quarks. It is the only nongravitational force affecting neutrinos.

Intermediate Vector Bosons (force particles)
Left handed leptons (structural particles)

Bulk form:
  The Neutrino Background
The Color Force (also called the Srong Force)
Binds quarks together. It is the strongest of the known forces. Three quarks are bound together to make the nucleons, i.e. the protons and neutrons. A residual color force leaks out of the nucleons and binds them together to form atomic nuclei, much as the electric force is not completely canceled in neutral atoms, allowing atoms to be bound together into molecules. The residual color force is called the strong nuclear force and was the form in which the existence of the color force was first discovered. The color force is described by the theory known as quantum chromodynamics.

Quarks (structural particles):
  Top, Bottom
  Strange, Charm
  Up, Down

Gluons (force particles):
  Red, Green, Blue



COMPOSITE PARTICLES


HADRONS
Hadrons are particles composed of combinations of quarks. There are three known types: mesons, baryons and pentaquarks.

Mesons
Particles composed of a bound Quark-Antiquark pair. They are unstable and short lived.

Baryons

Particles composed of a bound Quark triplet. There are hundreds of known baryons, but most combinations of three quarks are unstable and short-lived. There are two known stable forms that are called the nucleons that consist of the proton and the neutron. The proton is intrinsically stable, while free neutrons will decay with a half-life of roughly 12 minutes. Neutrons that exist in combinations with protons or in neutron stars are stable.

Nucleon Quark triplets
  Protons: 2 up and 1 down quark (UUD)
  Neutrons: 1 up and 2 down quarks (UDD)

Pentaquarks
A composite particle composed of five quarks (2 Up, 2 Down and 1 antiStrange quark). Recently discovered in 2003.
NUCLEI
These are composite particles composed of collections of protons and neutrons bound together by the strong nuclear force which is a residual color force caused by incomplete color charge cancellation by the quarks in nucleons. The number of protons in a nucleus determines its net electric charge and is called the atomic number (Z) of the nucleus. The number of neutrons is the neutron number (N). The total number of protons and neutrons in a nucleus is the atomic weight (W). Atomic weigths range from 1 for hydrogen to about 262 for the heaviest known nuclei.

Nuclear binding energies are in the range of 1-9 MeV (million electron volts) or roughly 1 million times greater than the binding energy of electrons in atoms (see below).

Stable Nuclei
Bulk form:
  Neutron star outer layers, old supernova debris

Radioactive Nuclei
These are unstable nuclei that change form by undergoing a radioactive decay.
Radioactive decay can occur in the following ways:
  Alpha decay: emission of an alpha particle, i.e. a Helium nucleus (2 protons, 2 neutrons)
  Beta decay: emission of an electron and an electron antineutrino
  Positive Beta decay: emission of a positron and an electron neutrino
  Gamma decay: emission of a gamma ray photon
  Electron capture: a nucleus captures a surrounding electron and emits a neutrino
  Internal conversion: interaction of the nuclear multipolar electric field with electron cloud causes ejection of an electron

Bulk form:
  Young Supernova debris (relatively speaking, depends on the half-life of the radioactive nuclei)


NEUTRON DEGENERATE MATTER
When a stellar core reachs a mass greater than 1.4 solar masses (but less than 3 solar masses) electron degenerate pressure can no longer support the stars weight. The core collapses until electrons are absorbed by the protons in the nuclei and the neutrons are compressed closely eneough together to form a Fermi gas. The collapsed object becomes a neutron star, composed, as the name suggests, mostly of neutrons. A neutron star is typically about 10 km in radius and is supported by neutron degenerate pressure. Since the neutrons are so compressed that their quantum wavefunctions overlap, they forming a single quantum system with many energy levels. The degenerate pressure arises from the Pauli exclusion principle in which a no two fermions can occupy a single quantum state. This also applies to the electrons in an atom and the degenerate electrons in a white dwarf star (see below).
ATOMS
These are composite particles composed of a nucleus bound by the electromagnetic force to a surrounding cloud of electrons. Atomic radii (using the covalent radii definition) range from 0.32 Angstroms for Hydrogen to 2.35 Angstroms for Cesium (1 Angstrom is equal to 10-10 meters).
1 gram of pure hydrogen contains 6.02214 x 1023 atoms, a quantity known as Avogadro's number.

Electrons are bound to their parent nuclei with binding energies that range from about 10 eV for outer shell electrons upto 120 keV (kilo electron volts) for the innermost electrons in the heaviest elements.

Neutral Atoms
In neutral atoms (no net electric charge) the number of negatively charged electrons is equal to the number of positively charged protons in the nucleus. There 104 types of Neutral Atoms currently known. These are the elements Hydrogen, Helium, ... up to element 104. Of these 93 are known to occur naturally, the rest (elements 94 and beyond) are all manmade. Elements 105 to 111 may exist depending on the plausibility of current claims of element synthesis. The Periodic Table displays the full set of elements and some of their properties.

Bulk form:
Collections of atoms exist in bulk form in three phases: solids, liquids and gases.
  Gases - Interstellar gas clouds, Cool Star Atmospheres, Gas Giant Atmospheres, Terrestial Planet Atmospheres
  Liquids - Planetary Oceans, Lakes, Rivers, Gas Giant Interior Layers,
  Terrestial Planet Interior Layers
  Solids - Terrestial Planets, Moons, Asteroids, Comets, Dust

Ions
These are electrically charged atoms with more (negatively charged) or less electrons (positively charged) than there are protons in the nucleus.

Bulk form:
  Plasmas - Stellar plasmas, stellar winds, HII Regions, planetary ionospheres and magnetospheres, compact object magnetospheres, other charged regions


ELECTRON DEGENERATE MATTER
When the mass of a stellar core in which fusion has ceased becomes large enough that the atoms at its center can no longer support the overlying pressure a white dwarf star is born. A white dwarf star has a size typically close to that of the Earth. The atoms are crushed together so closely that they lose coherence as individual entities, forming electron degenerate matter. The electron quantum wavefunctions overlap to form a single quantum system known as a Fermi gas. The electrons are held by the collective positive charge of the nuclei but don't belong to any particular nuclei. A similar thing happens to the outermost loosely bound electrons in a metal, which is why both metals and white dwarf interiors are very good electrical conductors. Pressure is provided by the Pauli exclusion principle in which no two Fermions can occupy the same quantum state, just as in an atom.

When more matter is added to a white dwarf star, the electrons are pushed more closely together and respond, via the Heisenberg uncertainty principle, by moving faster, thus increasing the electron pressure to support the increased weight. This process can continue as more weight is added until the electron velocity reaches close to the speed of light at which point it can increase no further. Adding more mass thus does not increase the electron pressure and when eneough weight is added, the star will collapse, forming a neutron star. The mass limit where this occurs is about 1.4 solar masses with some small spread depending on the composition of the star, and is known as the Chandrasekhar limit. No white dwarf stars more massive than the Chandrasekhar limit can exist and none have been measured in any white dwarf binary star system.


MOLECULES
Molecules are collections of atoms bound together in discrete units. The atoms are held together by a variety of residual electromagnetic forces caused by incomplete shielding of the positive nuclear charge by the surrounding cloud of atomic electrons. The residual attractive forces result in several types of interatomic or chemical bonds:

Covalent bonds    
Ionic bonds    
Metallic bonds    
Van der Waals bonds    
Hydrogen bonds

Diatomic Molecules
The simplest type of molecule is composed of two atoms bound together. At most there could be 0.5*N*(N+1) where N is the total number of elements. For N=104, this comes to 5460 potential diatomic molecules. But the actual number is much less. Surprisingly enough, chemists don't seem to know the actual number of stable diatomic molecules existing! Seven of the elements will combine with themselves: H, N, F, O, At, I, C and B (Have No Fear of an Ice Cold Beer). The halogen astatine (At) is an unstable element with a half-life of 8.3 hours for the most stable isotope and is usually not included in the list. Molecular Oxygen (O2) and molecular Nitrogen (N2) compose 99% of the Earth's atmosphere.

Examples of common heterogenous diatomic molecules are Sodium Chloride or table salt (NaCl), Carbon Monoxide (CO), Nitrous Oxide (NO), etc.

Triatomic Molecules
Water (H2O), Carbon Dioxide (CO2), Ozone (O3), Silicon Dioxide (SiO2), etc.

Simple Molecules with four or more atoms
Ammonia (NH3), Methane (CH4), etc.


Complex Organic Molecules
Most atoms can only bond to zero, one, two or three other atoms and hence can only form relatively simple molecules. The carbon atom can bond to four other atoms including other carbon atoms and can form extremely large and complex molecules. Carbon atoms can bond to form molecular rings, sheets, linear chains or ring and chain complexes.

Carbon based molecules can form complex Hydrocarbon chains, Polymers, Molecular rings, Buckyballs, etc.
Carbon molecules also form the basis for the molecules of organic life: Sugars, Fatty acids, etc.




ORGANIC LIFE


Water
Water, or dihydrogen oxide, is the fundamental liquid solution in which the chemistry of life takes place.

Water comes in all three basic phases on the surface of the Earth: solid, liquid and gas.


1. Solid water is in the form of ice and snow that cover the polar regions in a permanent ice cap and form seasonal ice caps during the winter seasons in each hemisphere. When water crystallizes into snowflakes, it can take on a myriad of beautiful hexagonal crystalline forms.
2. Liquid water forms the salty oceans of the Earth, lakes and rivers on land and rain when it falls from clouds in the atmosphere. The liquid layer on the Earth is called the hydrosphere.
3. Gaseous water comes mainly in the form of water vapor on the Earth. Water vapor typically composes 1% of the Earth's atmosphere by volume, but can reach 4% at times. Water vapor forms clouds at various heights in the atmosphere and Earth's atmosphere by volume, but can reach 4% at times. Water vapor forms fog under the right conditions near the ground.

Important physical chemical properties of water involve:
  1. Acids, bases and salts in solution.
  2. Solubility, the ability of compounds to dissolve in a liquid.

Water is a polar molecule and so materials composed of polar molecules will readily dissolve in water. However, nonpolar molecules (such as lipids) will not. These different solubility properties are essential to the formation of and operation of life. Insoluble cellular structures (such as the cell membrane), are composed of a nonpolar layer of molecules that surround and contain solutions of soluable organic molecules. Cells, and hence all cellular life, are essentially complex "bags of water".


Macromolecular components of organic life

Four major classes of organic molecules are built from molecular monomer units that are strung together to form polymers. These 4 classes are:

I. DNA - composed of nucleotide monomer units. The nucleotides are composed of an amino acid, a sugar base (Deoxyribose) and a phosphate group.
II. RNA - composed of nucleotide monomer units. The nucleotides are composed of an amino acid, a sugar base (Ribose) and a phosphate group.
III. Proteins - the monomer unit is an amino acid of which 20 different types are possible.
IV. Polysaccharides - the monomer units are sugars

V. The fifth major class of organic molecule are the lipids. The lipids are composed of fatty acid subunits although the lipids are not polymers.


Lipids
Lipids are organic molecules that are insoluble in water and soluble in organic solvents. They are the fatty molecules of biological tissue.
Carbohydrates
Carbohydrates are carbon compounds that contain large quantities of hydroxyl groups. The carbohydrates are the sugars: monosaccharides, oligosaccharides or polysaccharides.
Amino acids
In general amino acids are any molecule that contains both amine and carboxyl functional groups. The basic chemical unit of peptides, proteins, RNA and DNA are alpha amino acids in which the amino and caboxylate groups are attached to the same carbon, which is called the alpha-carbon.
Peptides
Short chains of amino acids. Peptides do not have to have a biological function, unlike proteins, which do.
Proteins
  Linear polymeric chains of amino acids (also known as peptides) that fold up into various complicated shapes. There are 20 different amino acid units that can be used. The primary structure of a protein is simply the sequence of amino acids in the polypeptide chain.
RNA - Ribose Nucleic Acid
  A single strand linear polymeric chain of amino acids that has a helical structure.
  4 Amino acids composing RNA:
    Adenosine - Uracil
    Guanine - Cytosine

DNA - Deoxyribose Nucleic Acid
  A double stranded linear polymeric chain of amino acids that has a helical structure. DNA is the central molecule of life. DNA contains all the information required for the reproduction and functioning of all single and multicellular life forms and most viruses. Specifically, DNA contains genetic information that codes for production of a large number of proteins.
Nucleotides:
  4 Amino acids compose DNA:
    Adenosine - Thymidine
    Guanine - Cytosine

Subviral Life
Viroids, Virusoids, Prions, Satellites, Plasmids, Transposons
  Subviral life is parasitic on the prokaroytes and eukaroytes. They contain genetic information in the form of DNA, RNA or protein sequences and are often simply embedded in the host cell DNA. The total number of nucleotides they contain is in the range of a few hundred. Click here for more details.
Viruses
  The viruses are parasites on the prokaroytes and eukaroytes and cannot reproduce on their own. They consist of a linear, circular or segmented strand of DNA or RNA wrapped in a protein capsule or rod with a possible cellular injection mechanism attached. The total number of nucleotides ranges from around 3,500 upto 280,000.

There are 7 main groups of viruses classified by their nucleic acid structures ( The Baltimore Method):
I. double stranded DNA
II. single stranded DNA
III. double stranded RNA
IV. positive sense (same polarity as mRNA) spiral single stranded RNA
V. negative sense spiral single stranded RNA
VI. RNA reverse transcribing
VII. DNA reverse transcribing

More than 4,000 virus species divided into 71 families or groups have been identified as of 1995.


Cells
All self-supporting life is cellular and uses double stranded DNA to contain genetic information. The number of nucleotides ranges from a few hundred thousand in simple bacteria to more than 100 billion in some plants.
Cells are divided into two types:
Prokaroytes - cells w/o nuclei
Eukaroytes - cells with a nucleus that contains the DNA

All Cellular Life is divided into three Domains: Archaea, Bacteria and Eucarya
Each Domain is further divided into the 7 categories of Kingdom, Phylum, Class, Order, Family, Genus, and Species. This 7 step classification scheme can be supplemented by sub or super categories at each stage.


Cellular Structures
The cell is essentially a bag of water that contains many substructures to process the chemicals the cell ingests.

Green plant cells have special structures called chloroplasts that allow them to absorb photons from the Sun and creates the chemical energy ( photosynthesis) to drive cellular metabolism. The solar derived chemical energy drives most of the biosphere on Earth. A second set of cells uses chemical energy ( chemosynthesis) to drive metabolic processes. Chemosynthetic life evolved first and much of it lives in exotic environments such as hydrothermal vents.



SINGLE-CELLED LIFE


Most life forms on Earth contain only a single cell. The simpler cells do not contain a nucleus and are called prokaryotic cells. All Prokaryotic life is single-celled and is classified into the two Domains: Archaea and Bacteria


Cells that contain a nucleus are called eukaryotic cells. Eurykarotic life falls into the Domain Eucarya and can be either single or multicelled. All single-celled eukaryotic life is classified into the Kingdom Protista.


Prokaryotic single celled life

Domain Bacteria


Capsules with DNA inside residing in a cytoplasmic mix of chemicals and no organelles. The DNA directly codes for proteins (rather than using seperate segments of DNA as in often the eukaryotes do). Bacteria often have flagella for movement purposes.
Evolved more than 3.5 billion years ago.

Domain Archaea
Simliar in outward appearance to bacteria but chemically and genetically very different. Three kingdoms have been identified so far: Euryarchaeota, Crenarchaeota and Korarchaeota
The archea contain the Extremophiles, life capable of living in extreme environments that include very hot water (thermophiles), highly acidic water, high salt conditions (halophiles), high sulfur conditions in deep sea vents, petroleum and even solid rock. Other types include that methanogens that produce methane and are posioned by oxygen. Archea that live at more moderate temperatures have been found on the deep sea floor, ocean surface, soil and guts of animals.



Eukaryotic single celled life

Domain Eucarya

Kingdom Protista
The Protista are all the single celled Eukaroytes that are not plants, fungi or animals. There is probably more than one kingdom since this category is simply a "catchall" classification.
Examples of protists are: Amoeba, Paramecium, various zooplankton, etc.


MULTICELLULAR LIFE


All multicellular life belongs to the Domain Eucarya and is divided into 4 Kingdoms: Chromista, Fungae, Plantae and Animalia.

Kingdom Chromista
Water Molds, Diatoms, Golden Algae, Yellow-Green Algae, Brown Algae, Kelp, etc.
Kingdom Fungae
Mushrooms, Toad Stools, etc.
Kingdom Plantae
Ferns, Grasses, Flowering Plants, Trees, etc.
Kingdom Animalia
All the Metazoa that we know and love.


Vendian animals
The first animals on Earth


INVERTEBRATES


Animals without a spinal column. They include 97% of all animal species.
Colonial Cellular Life
Placozoa are the most simple multicellular creatures with the least amount of DNA in an animal and bodies composed of only four cell types.
Sponges are simple filter feeders with bodies made of 10-20 different cell types.

Cnidaria (Corals, Anemonae, Medusae, Jellyfish, etc.)

Worms, Nematodes, etc.

Mollusca (Snails, clams, Oysters, Slugs, Squids, Cuttlefish, Octopi etc.)

Arthropods
Arthropods are the small, many legged creatures with hard outer bodies that form the most plentiful and diverse group of animals on Earth. They are five phylums:
1. Trilobites (now extinct)
2. Chelicerates (spiders, mites and scorpions)
3. Myriapods (millipedes, centipedes, etc.)
4. Hexapods (insects)
5. Crustaceans.


VERTEBRATES


Animals with a spinal column.
Sharks and Rays
Class Chondrichthyes

Fish
     Ray Finned Fish: Class Actinoptrygii
     Coelacanths: Class Actinistia
     Lungfish: Class Dipnoi

Amphibians
Class Amphibia

Reptiles
Class Reptilia

Dinosaurs
Dinosaurs et al.

Birds
Class Aves

Mammals
Class Mammalia


SENTIENT LIFE


A. Humans - Homo Sapiens

What a piece of work is a man! how noble in reason! how infinite in faculty! in form and moving how express and admirable! in action how like an angel! in apprehension how like a god! the beauty of the world! the paragon of animals! And yet, to me, what is this quintessence of dust?
William Shakespeare, "Hamlet", Act II, scene 2


I. Basic Properties of a Single Human Being

Length (adults): 1-3 meters.
Mass (adults): about 40-160 kilograms
Lifespans are typically 70 years under good conditions and up to 120 years maximum, comprising a string of 25,000 to 43,000 days. See here for more details.

Elemental Composition
A typical human weighing 100 kilograms is composed of about 3x1027 atoms divided into 14 different elements.

Dry Weight Elemental Composition by percent
Carbon    50 Sulfur    0.8
Oxygen    20 Sodium    0.4
Hydrogen  10 Chlorine  0.4
Nitrogen  8.5 Magnesium 0.1
Calcium   4.0 Iron      0.01
Phosphorus2.5 Manganese 0.001
Potassium 1.0 Iodine    0.00005

Typical Chemical Composition by percent
Water    61.6
Protein    17.0
Fat    13.8
Minerals    6.1
Carbohydrates1.5

Genetic Properties
The carrier of genetic properties is the DNA molecule contained in the nucleus of nearly every cell in the body (some cells, such as red blood cells, have no nucleus). The DNA in a human cell nucleus, otherwise known as the Human Genome, is divided in 46 pieces arranged in 23 paired chromosomes. The total length of the DNA in a nucleus is about 1 meter and contains 3.3 billion base pairs (34 Angstrom length for every 10 base pairs). The DNA is currently believed to code for about 20,000 - 25,000 genes, the segments of DNA that code for specific proteins. Each gene contains a few hundred to a few thousand base pairs with an average of around 4000 base pairs, so most of the DNA in a nucleus (about 97%) does not code for proteins. The nonprotein coding DNA has sometimes been called "junk" DNA, however this portion of the DNA may code for RNA molecules that are important in control of cellular operation.

Cellular Composition
There are about 60 trillion (6x1013) cells in the human body. These are divided into about 214 different types of cells that fall into 20 different classes.

Tissue Composition
The cells of the body are organized into four tissue types:
Epithelium - Lines, covers, protects, absorbs and secretes.
Connective tissue - As the name suggests, connective tissue holds everything together. Blood is considered a connective tissue.
Muscle tissue - Muscle cells contain contractile filaments that move past each other and change the size of the cell.
Nervous tissue - cells forming the brain, spinal cord and peripheral nervous system.

Organ Composition

Organ Systems
The organs of the human body are arranged into 12 organ systems:
1. circulatory system
2. digestive system
3. endocrine system
4. immune system
5. integumentary system
6. lymphatic system
7. muscular system
8. nervous system
9. reproductive system
10. respiratory system
11. skeletal system
12. urinary system

The Brain and Nervous System
The nervous system is the organ system most closely associated with the conscious properties of human beings, although other systems may participate as well (e.g. endocrine system). The Brain/nervous system contains about 100 billion cells (neurons and glia or just neurons? check this) (1011) composing about 0.167% of the body's total cells. Each neuron, on average, is connected to about 10,000 others for a total of 1 quadrillion (1015) connecting links. The brain is the most critical part and communicates with the body via the peripheral nervous system.

Conscious System
The conscious properties of the human operate through the chakra system. The chakra's are a set of 7 major conscious structures that cannot by seen by physical instruments but can be readily seen by a trained meditator with their inner eye. They produce and regulate the conscious phenomena of instinctual reactions, sexual urges, bodily commands, emotions, thoughts, dreams, psychic experiences and spiritual experiences. The chakral system is intimately connected to the brain/nervous system and this is part of the mind/body problem that is perhaps the most difficult and profound problem facing science today.

Self System
The Self is the most fundamental part of a human being and the part considered most "yourself". It contains the observing "I", the deepest sense of self, the will and the attention. How these parts are connected to the chakra system and the rest of the body as well as the greater spiritual world is at present unknown.


II. Collective Properties of the Human Species

"It is necessary to understand that war is common, strife is customary, and all things happen because of strife and necessity."
Heraclitus (quoted in Origen, Against Celsus )

About 6 billion human beings existed on Planet Earth in the year 2000 ACE, divided into roughly 170 nations covering all the continents and islands of the world except for Antarctica, which is held in common by all. Humans have explored the entire surface of the Earth including the polar regions, climbed the highest mountains and gone down into the deepest ocean depths. The atmosphere has been explored and regularly transversed with airplanes and other vehicles and humans have gone into low Earth orbit in spacecraft. Twelve men have walked on the surface of the Moon. Robotic spacecraft have landed on the Moon, Mars, Venus, Jupiter, Titan and one asteroid. Space probes have been sent to all planets in the Solar System except Pluto, as well as to several comets and asteroids.

Homo Sapiens evolved from our immediate predecessor Homo Erectus in a slow transition that happened about 1 million years ago. Thus Homo Sapiens have existed for roughly 50,000 generations assuming a mean generational length of 20 years. During this time, three ice ages have occurred that probably made a great impact on our evolution and the development of culture.

For most of our history, humans have lived in semi-nomadic Hunter-gatherer societies, in which food was obtained by hunting wild animals and gathering wild plants.

Nomadic herding (domesticating animals) started more than 10,000 years ago.

Large scale agriculture (domesticating plants) started about 10,000 years ago.

Agriculture led to the existence of settled populations in cultivated lands. For the last 8,000 years or so cities and towns were being created and melded into nations of ever greater size. The collections of cities and towns suffered periodic attacks and conquests by tribes of nomadic herdsmen and hunter-gathers or by other nations.

Writing started about 5000 years ago with cuneiform writing in Mesopotamia and shortly thereafter with hieroglyphic writing in Egypt. Writing also developed later elsewhere independently. Thus begins recorded history in which we know the names of actual people, places, and specific events and the thoughts of individuals.

The first great nation state known (but not necessarily the first) was the Kingdom of Egypt that started around 3000 BCE in the Nile Valley when the Pharoah Narmer united lower and upper Egypt together into one state. Great Empires were created by conquests that assimililated many cities, towns and tribes together into nations and often later fell apart. The first truly multinational empire was the empire of Sargon the Great founded around 2250 BCE in Mesopotamia and surrounding regions. Some later empires were the Assyrian, Bablyonian, Persian, Greek, Carthaginian, Roman, Indian, Chinese, Aztec, and Incan. The last period of significant nomadic invasions were the Mongol conquests of Eurasia in the 13th-14th centuries. The invention of ocean traveling ships led to the rise of overseas colonial empires. Some of the first were by the Vikings around 1000 ACE and later the European Colonial Empires of the 16th to 20th centuries, that have now been disbanded. The world is now divided into a collection of over 170 nation-states.

Significant collapses of city/town based areas of civilization:
1. Mycenean/Minoan and Hittite civilizations in the Aegean and Asia Minor region around 1100 BC (giving rise to the Atlantis legend?).
2. The Mohenjo-Daro civilization of the Indus valley.
3. The West Roman Empire in the 400's.
4. Mayan civilization in Meosamerica in late 800's ACE.
5. Anasazi civilization (SW USA) in 1300's ACE?
6. The Mound builder civilization (SE USA) in 1400's ACE?
7. The Khmer civilization in SE Asia in ?

Examples of nomadic invasions and conquests.
1. Hyskos conquest of Egypt, circa 1500 BCE
2. Celtic invasions of Roman Republic Italy, circa 700 BCE.
3. Cimmerian invasion and liquidation of Phrygia around 700 BCE.
4. Invasion and conquest of Mycenean Greece by the Hellenes and subsequent attacks by the "Sea Peoples" on Egypt which successfully resisted and the Hittite Kingdom which collapsed. The Philistines are descendents of the Sea Peoples that founded at set of cities in Canaan in what is now the Gaza strip. 5. Aryan invasion and conquest of Northern India, circa 1000 BCE
6. Persian/Median conquest of Assyrian Empire in 612 BCE.
7 Numerous attacks on the Roman Empire culminating in the Gothic/Vandal attacks, followed by the Huns, leading to collapse of West Roman Empire circa 400-500 ACE
8. Arab invasion of Roman and Parthian empires in 600's.
9. Viking invasions of Medieval Europe 790-1100 ACE.
10. Turkish invasion and conquest of Islamic empire circa 1000-1200 ACE.
11. Aztec invasion and conquest of central Mexico late 1300's/1400's ACE.
12. Mongol invasions of Eurasia, circa 1200-1300 ACE.
13. Mongol and Thai invasion of the Khmer empire.

The city way of life or "civilization" has come to dominate the entire world. The invention of rapid transportation and communication have melded the peoples of the Earth into an interconnected global civilization for the first time in history. The effects on regional societies of the spread of science, technology and industrialization are still in progress and causing much stress. There are still many festering religous, cultural, ideological, national, tribal and ethnic rivalries to be resolved that will probably erupt in various 21st century conflicts. Whether the world will see the rise of a single (or small number) of global political entities in the 21st century remains to be seen.

Much of the rapid transportation and abundant electrical power now enjoyed by much of the world's peoples depends on the exploitation of fossil fuels - coal, petroleum, and natural gas that will be exhausted or severely depleted by the end of the 21st century so a looming energy crisis is a challenge to be met in the future. The expansion of the world population (6 billion+ and rising) is creating problems with environmental degradation, resource depletion and pollution on a scale unknown only a century ago and present great challenges for 21st century global society.


B. Sentient Non-human life


There are apparently several other species on Earth that are of high intelligence. These are:

1. Dolphins, Porpoises and Whales
  
2. Giant Squids and some Octopi
  
3. Some Ant Colonies

Possible Others:
Some Apes?
Elephants?
Bee Colonies?
Termite Colonies?



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