ÿþ<html xmlns="http://www.w3.org/1999/xhtml"> <HEAD><TITLE>Irene Gabashvili's Publications</TITLE> <LINK REL="ICON" HREF="http://home.comcast.net/~aurametrix/A_logo_green_icon copy.ico"> </head> <BODY BACKGROUND="http://home.comcast.net/clipart/backgrounds/bkgnd019.gif" BGCOLOR="#FFFFF"> <a NAME="pubs"> <a name="publications"></a> <p><a name="Publications"></a> <b>Publications:</b> </p> <ol> <li><a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a>, B.H.&nbsp;Sokolowski&nbsp, C.C.Morton, A.B.Giersch <a href="http://www.ncbi.nlm.nih.gov/sites/pubmed/17541769"><b>"Ion Channel Gene Expression in the Inner Ear"</b></a>, J Assoc Res Otolaryngol. 2007 Sep;8(3):305-28. <!--<br><A HREF="JARO2007.pdf">--> <br><A HREF="http://www.pubmedcentral.nih.gov/picrender.fcgi?artid=2538437&blobtype=pdf"> <FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view/download (PDF&nbsp;1.3M)</A><br> <A HREF="http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=17541769#supplementary-material-sec"> Supplementary Material<br></A> Sequences: &nbsp; <a class='A' href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&amp;id=147743331" rel='nofollow' target="_blank">KCNMA1(1)</a>&nbsp; <a class='A' href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&amp;id=146771399" rel='nofollow' target="_blank">KCNMA1(2)</a> &nbsp; <a class='A' href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&amp;id=41393128" rel='nofollow' target="_blank">Clic4</a> &nbsp; <a class='A' href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&amp;id=147743330" rel='nofollow' target="_blank">KCNA2</a> &nbsp; <a class='A' href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&amp;id=146771398" rel='nofollow' target="_blank">TRPM3</a> &nbsp; </FONT> <br> <p> <li>M.&nbsp;Peleg,&nbsp;<a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, R.B.&nbsp;Altman,&nbsp <a href="http://media.wiley.com/product_data/excerpt/17/04716318/0471631817.pdf"><b>"Qualitative knowledge models in Functional Genomics and Proteomics"</b></a>, in: <i><a href="http://www.wiley.com/WileyCDA/WileyTitle/productCd-0471631817,descCd-tableOfContents.html">Genomics and Proteomics Engineering in Medicine and Biology</i></a> (Akay,M., ed), Wiley-IEEE Press, 2007. <br><A HREF="http://media.wiley.com/product_data/excerpt/17/04716318/0471631817.pdf"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view/download (PDF&nbsp;1.2M)</A></FONT> <br> <p> <li><p class="ModuleContent"> <a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a>, <a href="http://www.hpl.hp.com/personal/Dick_Carter/">R.&nbsp;Carter</a>, <a href="http://www.markstein.org/">P.&nbsp;Markstein</a>, <a href="http://labmed.bwh.harvard.edu/pathology/Faculty/Anne_B_Giersch.htm">A.B.&nbsp;Giersch</a> <b> <A href="http://dx.doi.org/10.1007/11532323_1"> "Differential Gene Expression in the Auditory System",</a></b> Lecture Notes in Computer Science, Vol. 3594, 2005, 1-8. <br><A HREF="LNCS2005.pdf"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view/download (PDF&nbsp;1.5M)</A></FONT> <br> <p> <li><a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, M.&nbsp;Whirl-Carrillo, M.&nbsp;Bada, D.R.&nbsp;Banatao and R.B.&nbsp;Altman, <b><a href="http://www.ncbi.nlm.nih.gov/sites/PubMed/14561879"> "Ribosomal Dynamics Inferred from Variations in Experimental Measurements"</a>,</b> <i><a href="http://www.rnajournal.org/">RNA</a></i>, Vol.&nbsp;9, 2003, 1301-1307. <br><A HREF="rna2003.pdf"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view/download (PDF&nbsp;0.4M)</A></FONT> <p> <li>Peleg M., <a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a> and R.B.&nbsp;Altman, <b><a href="http://ieeexplore.ieee.org/xpls/abs_all.jsp?isNumber=22806&prod=JNL&arnumber=1058232&arSt=+1875&ared=+1886&arAuthor=Peleg%2C+M.%3B+Gabashvili%2C+I.S.%3B+Altman%2C+R.B.&arNumber=1058232&a_id0=1058226&a_id1=1058227&a_id2=1058228&a_id3=1058229&a_id4=1058230&a_id5=1058231&a_id6=1058232&a_id7=1058233&a_id8=1058234&a_id9=1058235&a_id10=1058236&count=11"> "Qualitative models of molecular function: linking genetic polymorphisms of tRNA to their functional <i>sequelae</i>"</b></A>, <i>Proc. of the IEEE</i>, Vol.&nbsp;90, No.&nbsp;12, pp.&nbsp;1875-1886, 2002. <br> <A HREF="PIEEE2002.pdf"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view/download (PDF&nbsp;1.35M)</A></FONT> <p> <li>M.&nbsp;Whirl-Carrillo, <a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, D.R.&nbsp;Banatao, M.&nbsp;Bada and R.B.&nbsp;Altman, <b><A href="http://www.ncbi.nlm.nih.gov/pubmed/12003488"> "Mining biochemical information: lessons taught by the ribosome"</a></b>, <i>RNA</i>, Vol.&nbsp;8, No.&nbsp;3, pp.&nbsp;279-289, 2002. <br><A HREF="RNA2002.pdf"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view/download (PDF&nbsp;0.4M)</A></FONT> <br> <p> <li><a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, S.T.&nbsp;Gregory, M.&nbsp;Valle, R.&nbsp;Grassucci, M.&nbsp;Worbs, M.C.&nbsp;Wahl, A.E.&nbsp;Dahlberg, J.&nbsp;Frank, <A HREF="http://www.ncbi.nlm.nih.gov/pubmed/11511371"> <b>"The polypeptide tunnel system in the ribosome and its gating in erythromycin resistance mutants of L4 and L22"</b></a>,&nbsp; <i>Molecular Cell</i>, Vol. 8, No.&nbsp;1, pp.181-188, 2001. <br><A HREF="molcel2001.pdf"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view/download (PDF&nbsp;0.3M)</A></FONT><br> <p> <li><a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, R.K.&nbsp;Agrawal, C.M.T.&nbsp;Spahn, R.&nbsp;Grassucci, D.I.&nbsp;Svergun, J.&nbsp;Frank, P.A.&nbsp;Penczek, <A HREF="http://www.ncbi.nlm.nih.gov/sites/PubMed/10721991"> <b>"Solution structure of the <i>E.coli</i> 70S ribosome at 11.5A resolution"</b></A>, <i>Cell</i>, Vol.&nbsp;100, No.&nbsp;5, pp.&nbsp;537-549, 2000. <br> <A HREF="CELL2000.pdf"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view/download (PDF&nbsp;0.6M)</A><br> <a class='A' href="http://www.rcsb.org/pdb/explore.do?structureId=1EG0" rel='nofollow' target="_blank">PDB coordinates</a> </FONT> <p> <a name="#PENZ"> <li><a href="http://home.comcast.net/~igabashvili/"> I.S.&nbsp;Gabashvili</a>, M.&nbsp;Joshi, and M.&nbsp;Fragata, <A HREF="http://www.transworldresearch.com/title_contents/physical_chemistry_v4.htm"> <b>"Structure of polypeptides and biopolymers probed with FT­IR spectroscopy. The tyrosine ring stretching modes in poly (L­tyrosine) and photosystem II"</b></A>, <i>Recent Research Developments in Physical Chemistry</i>, Vol.&nbsp;4, pp.&nbsp;83-99, 2000.<p> <li>M.S.&nbsp;Van Loock, R.K.&nbsp;Agrawal, <a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, L.&nbsp;Qi, J.&nbsp;Frank, and S.C.&nbsp;Harvey, <A HREF="http://www.ncbi.nlm.nih.gov/sites/PubMed/11099376"> <b>"Movement of the Decoding Region of the 16S RNA Accompanies tRNA Translocation"</b></A>, <i>Journal of Molecular Biology</i>, Vol.&nbsp;304, No.&nbsp;4, pp.&nbsp;507-515, 2000.<p> <a name="#RAD"> <li>J.A.&nbsp;Ségui, V.&nbsp;Maire, <a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a> and M.&nbsp;Fragata,<A HREF="http://www.ncbi.nlm.nih.gov/sites/PubMed/11073314"> <b>"Oxygen evolution loss and structural transitions in photosystem II induced by low intensity UV-B radiation of 280 nm. wavelength</b></A>", <i>J.&nbsp;Photochem. Photobiol., B: Biol.</i>, Vol.&nbsp;56, No.&nbsp;1, pp.&nbsp;39-47, 2000. <br> <A HREF="jpp2000.pdf"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view/download (PDF&nbsp;0.3M)</A></FONT> <p> <li><a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, R.K.&nbsp;Agrawal, R.&nbsp;Grassucci, C.S.&nbsp;Squires, A.E.&nbsp;Dahlberg, J.&nbsp;Frank, <b><A HREF="http://www.ncbi.nlm.nih.gov/sites/PubMed/10562562"> "Major rearrangements in the 70S ribosomal 3D structure caused by a conformational switch in 16S ribosomal RNA"</A></b>, <i>EMBO journal</i>, Vol.&nbsp;18, No.&nbsp;22, pp.&nbsp;6501-6507, 1999. <br> <A HREF="embo1999.pdf"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view/download (PDF&nbsp;1.35M)</A></FONT> <IMG ALIGN=RIGHT width=50 height=75 SRC="http://home.comcast.net/~igabashvili/jmb1999.gif"> <p> <li><a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, R.K.&nbsp;Agrawal, R.&nbsp;Grassucci, J.&nbsp;Frank, <A HREF="http://www.ncbi.nlm.nih.gov/sites/PubMed/10064696"> <b>"Structure and Structural Variations of the <i>Escherichia coli</i> 30S Ribosomal Subunit as Revealed by Three-Dimensional Cryo-electron Microscopy"</b></a>, <i>Journal of Molecular Biology</i>, Vol.&nbsp;286, No.&nbsp;5, pp.&nbsp;1285-1291, 1999. (Fig.1 from the article used for the cover page illustration) <A HREF="jmb1999.pdf"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view/download (PDF&nbsp;1.35M)</A></FONT> <p> <IMG ALIGN=RIGHT width=50 height=75 SRC="http://home.comcast.net/~igabashvili/cmc.gif"> <br> <li>A.&nbsp;Khodjakov, <a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, C.L.&nbsp;Rieder, <A HREF="http://www.ncbi.nlm.nih.gov/sites/Pubmed/10401574"> <b>"Dumb" versus "Smart" Kinetochore Model for Chromosome Congression During Mitosis in Verterbrate Somatic Cells"</a></b>, <i>Cell Motility & the Cytoskeleton</i>, Vol.&nbsp;43, No.&nbsp;3, pp.&nbsp;179-185, 1999. (cover page illustration)<br> <A HREF="cms1999.pdf"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view/download (PDF&nbsp;0.1M)</A></FONT> <IMG ALIGN=RIGHT width=50 height=75 SRC="http://home.comcast.net/~igabashvili/jmb1998.gif"> <p> <li>A.&nbsp;Malhotra, P.A.&nbsp;Penczek, R.K.&nbsp;Agrawal, <a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, R.A.&nbsp;Grassucci, R.&nbsp;Junemann, N.&nbsp;Burkhardt, K.H.&nbsp;Nierhaus and J.&nbsp;Frank, <A HREF=" http://www.ncbi.nlm.nih.gov/sites/PubMed/9653034"> "<b><i>E.coli</i> 70S Ribosome at 15A Resolution and Localization of Fmet-tRNA(fmet) at the P-site by Cryo-electron Microscopy</A></b>", <i>Journal of Molecular Biology</i>, Vol.&nbsp;280, pp.&nbsp103-115, 1998. (Fig.6A from the article used for the cover page illustration)<br> <A HREF="jmb1998.pdf"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view/download (PDF&nbsp;2.4M)</A></FONT> <p> <li><a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, A.&nbsp;Menikh, J.&nbsp;Segui, M.&nbsp;Fragata, <b><A HREF="http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TGS-3SR4KXB-F&_user=10&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=55830da843397144e04ddc04b25ce4dc"> "Protein structure of photosystem II studied by FT-IR spectroscopy. Effect of digalactosyldiacylglycerol on the tyrosine side chain residues</b>"</A>, <i>Journal of Molecular Structure</i>, Vol.&nbsp;444, pp.&nbsp;123-133, 1998. <p> <li><a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, S.A.&nbsp;Khan, S.J.&nbsp;Hayes, P.&nbsp;Serwer, <A HREF="http://www.ncbi.nlm.nih.gov/sites/PubMed/9356254"> <b>"Polymorphism of T7 bacteriophage"</A></b>, <i>Journal of Molecular Biology</i>, Vol.&nbsp273, No.&nbsp;3, pp.&nbsp;658-667, 1997.<br> <A HREF="jmb1997.pdf"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view/download (PDF&nbsp;0.3M)</A></FONT> <p> <li>M.&nbsp;Fragata, E.K.&nbsp;Nenonéné, V.&nbsp;Maire, <a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, <b><A HREF="http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TGS-3S9K0K2-2K&_user=10&_origUdi=B6TGS-3SR4KXB-F&_fmt=high&_coverDate=03%2F31%2F1997&_rdoc=1&_orig=article&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=edb474dc93d63e59d3da14bbeb1a8dd2">"Structure of the Phosphatidylglycerol-photosystem II complex studied by FT-IR Spectroscopy. Mg(II) effect on the polar head group of phosphatidylglycerol"</b></A>, <i>Journal of Molecular Structure</i>, Vol.&nbsp;405, Nos.&nbsp;2-3, pp.&nbsp;151-158, 1997. <p> <li>R.&nbsp;Dzadzamia, M.&nbsp;Revazishvili, <a href="http://home.comcast.net/~igabashvili/">I.&nbsp;Gabashvili</a>, <b>"Accounting Phrasal Dictionary (Georgian-English-Russian, English-Russian-Georgian, Russian-Georgian-English)"</b> Georgian Academy of Sciences, Tbilisi, 1995. <p> <li><a href="http://home.comcast.net/~igabashvili">I.&nbsp;Gabashvili</a>, Z.&nbsp;Brelidze, Yu.&nbsp;Stepanov, G.&nbsp;Khachapuridze, <b>"Simulation of the Mechanisms of Cell Genome Stability and Instability"</b></a>, In: <i><A HREF="http://openlibrary.org/b/OL9148808M">"Mathematical Modelling: Methodology, Software Tools and Applications"</i>, </A> pp.&nbsp;79-83 (Popova E.D., ed) DATECS Publish., Sofia, Bulgaria, 1993. <p> <a NAME="PHYSICS"> <li><a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a>, A.Yu.&nbsp;Grosberg, </a> <A HREF="http://www.ncbi.nlm.nih.gov/sites/PubMed/1524706"> <b>"Dynamics of Double-Stranded DNA Reptation from Bacteriophage"</b></A>, <i> Journal of Biomolecular Structure and Dynamics. </i>, Vol.&nbsp;9, No.&nbsp;5, pp.&nbsp;911-920, 1992. <br> <A HREF="jbsd1992.pdf"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view/download (PDF&nbsp;3.9M)</A></FONT> <p> <li><a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a>, A.Yu.&nbsp;Grosberg, <A HREF="http://www.ncbi.nlm.nih.gov/sites/PubMed/1799594"> <b>"DNA Reptation from Bacteriophage"</b></A>, <i>Biophysics</i>, Vol.&nbsp;36, pp.&nbsp;788-793 , 1991.<br> (Biofizika,1991,36,788-793:Rus) <p> <li><a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a>, A.Yu.&nbsp;Grosberg, D.V.&nbsp;Kuznetsov, G.M.&nbsp;Mrevlishvili, <A HREF="http://www.ncbi.nlm.nih.gov/sites/PubMed/1799593"> <b>"Theoretical Model of DNA Packaging in the Phage Head"</b></A>, <i>Biophysics </i>, Vol.&nbsp36, No.&nbsp5, pp.&nbsp;782-789, 1991. (Biofizika,1991,36,780-787:Rus) <p> &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <center>Book Reviews:</center> <li><a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a>, Greg S.&nbsp;Snider. <a href="http://ojps.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=ABMECF000031000011001443000001&idtype=cvips&gifs=Yes"> <b>"Introduction to Biomedical Imaging"</b></a> <i>Annals of Biomedical Engineering</i>, vol. 31, No. 11, p. 1443, 2003. <p> &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <!-- <center>Submitted:</center> <li><p class="ModuleContent"> --> <p> <center>In revision:</center> <li>D.Rey&nbsp;Banatao, Teri E. Klein, <a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a>, Russ B.&nbsp;Altman,&nbsp <b>"Fast search for ion binding sites in complex RNA structures: Mapping the Ribosome"</b>, <i> </i>2008. <p> <li><p class="ModuleContent"> <a href="http://www.hpl.hp.com/personal/Dick_Carter/">R.&nbsp;Carter</a>, <a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, <b>"The Stack-AND Exact String Matching Algorithm", </b>2008<p> <p> <center>In preparation:</center> <a NAME="#AGE"> <li> <a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a>, A.B.Giersch, <b>"Age-related hearing loss: before the beginning", 2008</b><br> </a> <a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a>, C. Allsup, <b>"Nanometer test - the way nature intended", 2008</b><p> <center>HP restricted: Technical Reports and Internal Conference Papers:</center> <li>"New Genes Worth Hearing About" <a href="http://library.hp.com/techpubs/2005/HPL-2005-47.html">HPL-2005-47</a>, with Dick Carter and Peter Markstein <li>"Nanotechnology-Based Fast and inexpensive genome sequencing"<a href="http://library.hp.com/techpubs/2005/HPL-2005-48.html">HPL-2005-48</a>, with Zhiyong Li, Ken Ward, Wei Wu, Milo Overbay, Robert Seay, S.-Y. Wang, and Stan Williams <li>"The Stack-AND Genome Search Algorithm", with Dick Carter and Peter Markstein (TechCon'06, April, 2006, Los Angeles, CA) <li>"Computational applications in genetic oncology", with Dick Carter and Peter Markstein (TechCon'06, April, 2006, Los Angeles, CA) <li><a href="http://web.hpl.hp.com/personal/clb/submissions/gabashvili.pdf">"Interlinking Genes and Databases"</a>, single authorship, paper presented at HP Labs Enterprise Computing and Services Research Workshop. Palo Alto, December 6-7, 2005 <li>"Ion Channel Gene Isoforms of the Auditory System", <a href="http://library.hp.com/techpubs/2006/HPL-2006-62.html">HPL-2006-62</a>, with Dick Carter, Peter Markstein, Cynthia Morton and Anne Giersch <li>"Ion Channel Research Supplementary Material", <a href="http://library.hp.com/techpubs/2006/HPL-2006-61.html">HPL-2006-61</a>, ", with Dick Carter, Peter Markstein, Cynthia Morton and Anne Giersch <p> <!--</ol>--> &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <a NAME="con"> <center>SELECTED ABSTRACTS and CONFERENCE PAPERS</center> <br> <!--<ul>--> <li><p class="ModuleContent"> Ígor L. Almeida, Adelmo L. Cechin, Cláudia K. Barcellos, <a href="http://www.gabashvili.us">Irene S. Gabashvili</a> <b>"<a href="http://ismb2006.cbi.cnptia.embrapa.br/posters_list.php">A New Methodology for Regulatory Network Inference</a>"</b> 14<sup>th</sup> Annual Conference on intelligent Systems for Molecular Biology (Fortaleza, Brazil, August 6-10, 2006). <br> <A HREF="http://ismb2006.cbi.cnptia.embrapa.br/poster_abstract.php?id=K-15 " target="_blank" coords="48,46,204,153"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view</A></FONT></A> </p> <li><p class="ModuleContent"> <a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a>, <b>"Assessing functional relevance of UTR isoforms of genes" </b>, <a class="ModuleContent" href="http://www.GenomicsAdvances.com"> Advances in Functional Genomics</a> (South San Francisco, CA, April 25-26, 2006)</p> <li><p class="ModuleContent"> <a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a>, <b>"Interlinking Ion Channels" </b>, 50th <a class="ModuleContent" href="http://www.biophysics.org/meetings/annmtg.htm">Annual Meeting of Biophysical Society. </a>Salt Lake City, Utah, February 18-22, 2006. (Biophys. J., 2006, 90, N 1, 2669-Pos/B336)<br> <A HREF="Pub_files/bsm2006.htm" target="_blank" coords="48,46,204,153"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view</A></FONT></A> </p> <li><p class="ModuleContent"> <a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, <a href="http://www.hpl.hp.com/personal/Dick_Carter/">R.&nbsp;Carter</a>, <a href="http://www.markstein.org/">P.&nbsp;Markstein</a>, <a href="http://labmed.bwh.harvard.edu/pathology/Faculty/Anne_B_Giersch.htm">A.B.&nbsp;Giersch</a> <b>"EST-based analysis of gene expression in the human cochlea"</b>, Computational Systems Bioinformatics Conference, 2005. Workshops and Poster Abstracts IEEE 8-11 Aug. 2005, pp. 75-76 <a href="http://conferences.computer.org/bioinformatics/CSB2005/PDF2/030_gabashvilii_cochlea.pdf"> <FONT face="Arial, Helvetica, Sans-Serif" size=-2>view/download (PDF)</A></FONT> </p> <li> <a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a>, <a href="http://hpl.hp.com/personal/Dick_Carter/">R.&nbsp;Carter</a>, &nbsp;<a href="http://www.markstein.org/">P.&nbsp;Markstein</a>,&nbsp; <a href="http://www.iscb.org/ismb2005/posters_list.html#E"><b>"Mapping and identification of sequence flips in ESTs"</a> (D110)</b>, <a href="http://www.iscb.org/ismb2005/">13<sup>th</sup> International Conference on Intelligent Systems for Molecular Biology</a> (Detroit, MI, June 24-29, 2005) </p> <li> <p class="ModuleContent"> <a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, <a href="http://www.hpl.hp.com/personal/Dick_Carter/">R.&nbsp;Carter</a>, <a href="http://www.markstein.org/">P.&nbsp;Markstein</a>, <a href="http://hearing.bwh.harvard.edu/anne.HTM">A.B.&nbsp;Giersch</a> <b>" Identifying hearing impairment gene and pathway candidates by EST-based analysis of gene expression"</b>, <a href="http://www.bio-itworldexpo.com/live/26/">Bio-IT World 2005</a>(Boston, MA, May 17-19, 2005) <i>Poster Display in Research Row: Real-World Studies</i></p> <a name="#SENSES"> <li> <p><a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a> <b>"Ion Channels: Learning from the body electric"</b> <a href="http://qb3.org/lifeengineering.htm">QB3 Life Engineering Symposium</a> (San Francisco, CA, August 19-20, 2005) </p> <li> <a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a>, <a href="http://hpl.hp.com/personal/Dick_Carter/">R.&nbsp;Carter</a>, &nbsp;<a href="http://www.markstein.org/">P.&nbsp;Markstein</a>,&nbsp; <b>"Identification of drug target candidates by EST analysis"</b>, <a href="http://www.selectbiosciences.com/conferences/EmTech2005/"> Emerging Technologies for Drug Discovery <a>Conference and Exhibition. South San Francisco, CA, April 5-6, 2005 </p> <li><p class="ModuleContent"> <a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a>, <a href="http://hpl.hp.com/personal/Dick_Carter/">R.&nbsp;Carter</a>, &nbsp;<a href="http://www.markstein.org/">P.&nbsp;Markstein</a>,&nbsp; A.B Giersch, <b>"Novel Ion Channels in Human Cochlea" </b>, 49th <a class="ModuleContent" href="http://www.biophysics.org/meetings/annmtg.htm">Annual Meeting of Biophysical Society. </a>Long Beach, CA Feb. 12-16, 2005. (Biophys. J., 2005, 88, N 1, p.547A, Suppl.S)<br> <A HREF="Pub_files/bsm2005.htm" target="_blank" coords="48,46,204,153"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view</A></FONT></A> </p> <li><p class="ModuleContent"><a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a>, <a href="http://hpl.hp.com/personal/Dick_Carter/">R.&nbsp;Carter</a>, &nbsp;<a href="">P.&nbsp;Markstein</a>,&nbsp; A.B Giersch,<b> "Mechano-sensation genes of hearing"</b>, 44th Annual Meeting, <A HREF="http://www.ascb.org/">The American Society for Cell Biology. </A> Washington, DC, Dec. 4-8, 2004. (Mol.Biol.Cell, 15, 352A, Suppl. S, 2004) <br> <!-- <A HREF="Pub_files/ascb2004.htm" target="_blank" coords="48,46,204,153"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view</A></FONT></A> --></p> <li><p class="ModuleContent"> <a class="ModuleContent" href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, <b>"Protein-RNA Interactions: a message from the untranslated region of a gene" </b>, 48th <a class="ModuleContent" href="http://www.biophysics.org/meetings/annmtg.htm">Annual Meeting of Biophysical Society. </a>Baltimore, MD Feb. 14-18, 2004. (Biophys. J., 2004, 86, N 1, part&nbsp;2, Suppl.S p.352A)<br> <A HREF="Pub_files/bsm2004.htm" target="_blank" coords="48,46,204,153"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view</A></FONT></A> </p> <li><a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a>, &nbsp;<a href="http://hpl.hp.com/personal/Peter_Markstein/">P.&nbsp;Markstein</a>,&nbsp; <b>Heat-shock related protein-binding regions in untranslated RNA </b> 43rd Annual Meeting, <A HREF="http://www.ascb.org/">The American Society for Cell Biology. </A> San Francisco, CA, Dec. 13-17, 2003. (Late Abstracts Poster Session, L289). <br> <A HREF="Pub_files/ascb2003.htm" target="_blank" coords="48,46,204,153"><FONT FACE="Arial, Helvetica, Sans-Serif" SIZE=-2>view</A></FONT></A> <p> <li><a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a>, M.&nbsp;Whirl-Carrillo, M.&nbsp;Bada, D.R.&nbsp;Banatao, R.B.&nbsp;Altman, <b>Mining heterogeneous ribosomal structure data. </b> 47th <A HREF="http://www.biophysics.org/meetings/annmtg.htm">Annual Meeting of Biophysical Society. </A> San Antonio, TX, Mar. 1-5, 2003. (Biophys. J., 2003, 84, N 1, part 2, p.463A) <br> <p> <li><a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a>, M.&nbsp;Peleg, R.B.&nbsp;Altman, <b>Modeling molecular function and failure: misreading of genetic code by the ribosome</b>. 46th <A HREF="http://www.biophysics.org/meetings/annmtg.htm"> Annual Meeting of Biophysical Society. </A> San Francisco, CA, Feb. 23-27, 2002. (Biophys. J., 2002, 82, N 1, part 2., pp.&nbsp167a-168a)<p> <li><a href="http://home.comcast.net/~igabashvili">I.S.&nbsp;Gabashvili</a> , M.&nbsp;Peleg, R.B.&nbsp;Altman, <b>Ontology of ribosomal function and failure: the case of translational misreading.</b> Triennial International Conference on the Ribosome. Queenstown, New Zealand, Jan. 27 - Feb. 1, 2002. p.&nbsp;127. <p> <li><a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, S.T.&nbsp;Gregory, M.&nbsp;Valle, R.&nbsp;Grassucci, M.&nbsp;Wahl, A.E.&nbsp;Dahlberg, J.&nbsp;Frank, <b>Possible role of ribosomal proteins L4 and L22 in gating of the polypeptide tunnel.</b> 45th <A HREF="http://www.biophysics.org/meetings/annmtg.htm">Annual Meeting of Biophysical Society. </A> Boston, MA, Feb. 17-21, 2001. (Biophys. J., 2001, 80, N 1, Part 2., p.&nbsp;2555)<p> <li><a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, R.K.&nbsp;Agrawal, C.M.T.&nbsp;Spahn, R.&nbsp;Grassucci, J.&nbsp;Frank, P.&nbsp;Penczek, <b> 11.5A resolution cryo-EM map of the <i>E.coli</i> 70S ribosome: evidence for molecular rearrangements.</b> (oral presentation) The 44th <A HREF="http://www.biophysics.org/meetings/annmtg.htm"> Biophysical Society Annual Meeting. </A> New Orleans, LA, Feb. 12-16, 2000. (Biophys. J., 2000, 78, N 1, p.&nbsp;2, p.&nbsp;8A. 44Plat.)<p> <li><a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, R.K.&nbsp;Agrawal, R.&nbsp;Grassucci, C.S.&nbsp;Squires, A.E.&nbsp;Dahlberg, J.&nbsp;Frank, <b> Local switch and global tuning of the decoding ribosome: a cryo-EM story.</b> The 44th <A HREF="http://www.biophysics.org/meetings/annmtg.htm">Biophysical Society Annual Meeting.</A> New Orleans, LA, Feb. 12-16, 2000. (Biophys. J., 2000, 78, N 1, p.&nbsp;2, p.&nbsp;169A.)<p> <li><a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, R.&nbsp;Agrawal, A.&nbsp;Heagle, R.&nbsp;Grassucci, J.&nbsp;Frank, <b>rRNA-based conformational flexibility of the <i>Escherichia coli</i> 30S ribosomal subunit.</b> RNA-99, Edinburgh, Scotland, UK. June 23-27, 1999.<p> <li><a href="http://home.comcast.net/~igabashvili/">I.&nbsp;Gabashvili</a>, R.&nbsp;Agrawal, A.&nbsp;Heagle, R.&nbsp;Grassucci, J.&nbsp;Frank, <b>Hinge-bent regions in the <i>Escherichia coli</i> 30S ribosomal subunit: a Three-dimensional cryo-electron microscopy study.</b> The Ribosome: Structure, Function, Antibiotics and Cellular Interactions. Snekkersten, Helsingoer, Denmark, June 13-17, 1999. <p> <li><a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, R.K.&nbsp;Agrawal, R.A.&nbsp;Grassucci, and J.&nbsp;Frank, <b>Conformational variations of the <i>Escherichia coli</i> 30S ribosomal subunit.</b> Biophysical Society 43rd Annual Meeting, Baltimore, MD, Feb. 1999. (Biophys. J., 1999, 76, N 1, p.&nbsp;2, p.&nbsp;A26.)<p> <li><a href="http://home.comcast.net/~igabashvili/">I.&nbsp;Gabashvili</a>, M.&nbsp;Fragata, <b>Decomposition of the Infrared Spectra of Benzene and Derivatives: a comparative vibrational analysis.</b> Proc. of the 22nd Annual Conference of the Federation of Analytical Chemistry and Spectroscopy Societies, Cincinnati, OH, 1995.<p> <a name="#PCOS"> <li><a href="http://home.comcast.net/~igabashvili/">I.&nbsp;Gabashvili</a>, N.&nbsp;Okudzhava, <b><a href="http://home.comcast.net/~igabashvili/PCOS_95.html">On the Heritability of Polycystic Ovary Syndrome in Families and Populations of Georgia.</b></a> Abstr. of 10th Workshop on <a href="http://humrep.oxfordjournals.org/cgi/issue_pdf/frontmatter_pdf/9/11.pdf">Development and Function of the Reproductive Organs</a>, Huddinge, Sweden, 1995. <p> <li><a href="http://home.comcast.net/~igabashvili/">I.&nbsp;Gabashvili</a>, Z.&nbsp;Brelidze, G.&nbsp;Khachapuridze, <b>Intellectual Terminal for Geneticists. </b> Proc. of the Intl. Conf. <a href="http://www.ibiblio.org/pub/academic/medicine/brazil-mirror/conferences/hc94b.txt"> "The Healthcare Computing"</a>, p.&nbsp;803, Harrogate, England, 1994. <p> <li><a href="http://home.comcast.net/~igabashvili/">I.&nbsp;Gabashvili</a>, Z.&nbsp;Brelidze, G.&nbsp;Khachapuridze, <b>Biomathematics of the Genetic Homeostasis.</b> In MIE'94 (Proc. of the 12th Intl. Congress on Medical Informatics) Lisbon, Portugal, pp.&nbsp;132-137, 1994. <p> <li><a href="http://home.comcast.net/~igabashvili/">I.&nbsp;Gabashvili</a>, Z.&nbsp;Brelidze, G.&nbsp;Khachapuridze, <b>Intelligent Computer-Assisted Learning in Genetic Reasoning.</b> Proc. of the 3rd Panhellenic Congress on Medical Informatics. Thessaloniki, Greece, 1994.<p> <li> <a href="http://home.comcast.net/~igabashvili/">I.S.&nbsp;Gabashvili</a>, A.Yu.&nbsp;Grosberg, D.V.&nbsp;Kuznetsov, G.M.&nbsp;Mrevlishvili, <b>Phage DNA Packaging and Reptation from Protein Shell.</b> Abstr. Int. School-Seminar "Modern Problems of Physical Chemistry of Macromolecules" Pushino, USSR, p.&nbsp;105, 1991.<p> </ol> </BODY></HTML>