Working on the Assembly Line

Living things often have workers wandering around trying their Instructions on everything they bump into, but there are some jobs that require better organization. For instance, Life's process for extracting energy from sugar requires at least ten steps, each a chemical change. If living things couldn't do this quickly and efficiently, they'd starve. To carry out complex tasks with many steps, living things organize the workers which carry out those steps into clusters called complexes. Each cluster is something like an assembly line in a real factory, with the difference that there is no conveyer belt. Instead, workers pass materials back and forth among themselves. Workers that are in complexes usually have an Instruction that includes holding onto one or more of the other workers in the complex. Sometimes, the complex contains special workers whose Instruction is to hold the complex together.

The set of steps needed to carry out a series of chemical changes is called a pathway. For instance, the ten steps for getting energy from sugar are called the glycolytic ("sugar-cutting") pathway.



changing ethyl alcohol to acetaldehyde and then acetic acid
The shortest pathways have only two steps. One of these very short pathways is the pathway the human body uses to detoxify alcohol -- specifically, the ethyl alcohol in beer, wine, and other drinks. In the first step of this pathway, a worker called alcohol dehydrogenase I snips two hydrogen
atoms off of every molecule of ethyl alcohol it runs into, turning it into acetaldehyde. Acetaldehyde is actually much more toxic than ethyl alcohol, but another worker (aldehyde dehydrogenase I) replaces another of its hydrogen atoms with an oxygen atom and a hydrogen atom, turning it into acetic acid. Acetic acid is the acid in vinegar, and isn't harmful to us (in small quantities).

Living things have other tricks for making things more efficient in their factories. Nearly all factories have an internal railroad system, the individual lines of which are called micro-tubules. The whole system is made of workers: the rails are workers, as are the cars and locomotives. Eukaryotes also have many rooms in their factories, each dedicated to a specific function. These rooms are called organelles.

So far, we've discussed what workers do without saying what the sum of all the work adds up to: visible effects on the living thing the workers make up. Or, in other words, how do we see the effects of workers which are themselves too small to be seen?

We'll be seeing a lot of alcohol dehydrogenase I in this site. Al (as he's known to friends) is a typical worker, and unlike most workers in living things, directly produces a familiar effect.


more about Al

Curious readers may wonder where the hydrogen atoms Al snips off go. Al pastes one onto another molecule called NAD, whose purpose is to carry around hydrogen atoms. The other floats off by itself.


Al moving hydrogen atoms

Here's Aldehyde Dehydrogenase, the other half of the team:


more about Aldehyde Dehydrogenase

Part One: Reading the Book
Introduction
Everything I needed to know, I learned from...
Reading the Book
Getting Organized
Workers, Tools, and Materials
How workers are organized
Seeing the Unseen
Book Binding
The Anatomy of a Worker
Making Workers
Seeing the Unseen -- Double Vision

Part Two: Copying the Book

Part Three: Improving the Book

Table of Contents
Questions? Comments or Suggestions? Copyright Notice