Sequence Analysis Web Sites

High Performance Sequence Analysis
Program	Source	Web Server	Software Availability	Remarks
BLAT	Jim Kent, University of California at Santa Cruz	Yes	Free for academics	Used in Santa Cruz genome browser
FLAG	Biomedical Engineering Center, Industrial Technology Research Institute of Taiwan	Yes
MPSRCH	Aneda	Demo		Complete Smith-Waterman
MUMmer 2	TIGR		Free for academics	Based on suffix trees
PatternHunter	Bioinformatics Solutions	Demo	Free for academics
WABA	Jim Kent, University of California at Santa Cruz	Yes	Free for academics

Last updated August 20, 2002 by Nat Goodman